Software developed by the Bioinformatics laboratory NUI Maynooth
Program	Description	Link
GCUA	General codon usage analysis	link
Crann	Program for detecting adaptive evolutionary events in protein-coding DNA sequences	link
Clann	Program for constructing phylogenetic supertrees from input treres with overlapping leaf sets	link
Puzzling	Program for constructing phylogenetic supertrees using extensions of the quartet puzzling algorithm	link
PutGaps	Program for adding gaps to a DNA alignment file using its Amino Acid aligned equivalent	link
ModelGenerator	Program for selecting the best-fit amino acid or nucleotide substitution model	link